Skills

scientific-pkg-gget

scientific-pkg-gget is a skill in affaan-m/ECC, last changed 10 Sept 2026. It can run shell commands, reach the network and name web addresses — read the findings before installing. Our pattern check flagged nothing at commit 25278e7 on 26 Oct 2026.

Pattern check: nothing flagged · commit 25278e7 · 26 Oct 2026

Install
From the author
gget CLI and Python workflow for quick genomic database queries, sequence lookup, BLAST-style searches, enrichment checks, and reproducible bioinformatics evidence logs. Use when a task needs quick bioinformatics lookup across genomic reference databases with the gget CLI or Python package.
Licence
MIT
Repo stars
290.0k
Folder last changed
10 Sept 2026 (opens in a new tab)
Publisher
affaan-m
Files
1 file
Checked
25278e7 (opens in a new tab) · 26 Oct 2026

Install

Each tab says whether it installs commit 25278e7, the one we checked, or the latest version.

No tab for your agent? Use Any agent for OpenCode, Goose, Windsurf (Devin Desktop), Zed, Roo Code, Factory Droid, Junie, Amp and Antigravity, and Claude Code for Cline. Kiro needs the folder copied by hand.

Pinned to commit 25278e7, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&
  git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/affaan-m/ECC.git "$tmp" &&
  git -C "$tmp" fetch -q --depth 1 origin 25278e7d7b6cf6e6a4e7a6c8e10f14ff22f0eb5b &&
  git -C "$tmp" sparse-checkout set -- skills/scientific-pkg-gget &&
  git -C "$tmp" checkout -q 25278e7d7b6cf6e6a4e7a6c8e10f14ff22f0eb5b &&
  mkdir -p .claude/skills &&
  mkdir .claude/skills/scientific-pkg-gget &&
  cp -R "$tmp"/skills/scientific-pkg-gget/. .claude/skills/scientific-pkg-gget/ &&
  rm -rf "$tmp"

If Claude Code was already running and this created the skills folder, run /reload-skills.

Claude Code docs (opens in a new tab)

What it can touch

From the files and frontmatter at commit 25278e7. This is how much a skill can do, not whether it is risky.

What it can touch: Shell, network or credentials

  • Runs shell commands

    Its instructions or files give the agent commands to run on your computer.

  • Reaches the network

    It sends or fetches data over the internet, for example with curl, an HTTP library or a package install.

  • Names web addresses

    It mentions outside web addresses the agent may visit. We list them but don't follow them.

Pattern check

Pattern check: nothing flagged · commit 25278e7 · 26 Oct 2026

We checked every text file in this skill, at commit 25278e7 on 26 Oct 2026, against 45 published patterns such as download-and-run commands, hidden text and credential access. We don't run the skill, we don't read the web pages it points to, and we can't judge everything its instructions might lead an agent to do. In published tests, pattern checks like this one missed most malicious skills. Read the skill before you install it — especially anything it asks you to download or run.

How the check worksReport an incorrect finding

Outside links we did not follow

  • https://pachterlab.github.io/gget/
  • https://pachterlab.github.io/gget/en/updates.html
  • https://github.com/pachterlab/gget
  • https://doi.org/10.1093/bioinformatics/btac836

Format check

Each agent reads SKILL.md a little differently. We check the file against each one's published rules; we don't run the skill in any agent.

  • Agent Skills specPasses

    The open format from agentskills.io, held to what the strictest agents enforce, so one folder loads everywhere.

    • Note

      There is no license field, so readers can't tell whether they may reuse the skill. O2

      Fix: Add license: with an SPDX name such as MIT or Apache-2.0, or the name of a bundled licence file.

  • Claude CodePasses
  • Claude apps & API uploadPasses

    Uploading to claude.ai or the Claude API, or packaging with Anthropic's script, accepts only the six spec fields and stops on anything else.

    • Note

      The description is 291 characters. The claude.ai Help Center says 200 at most, though Anthropic's API docs and validator allow 1,024. D4

      Fix: If the claude.ai upload refuses it, trim the description to 200 characters.

  • OpenAI (Codex & API)Passes
  • VS Code & CopilotPasses

SKILL.md

Files

1 file

PathSize
SKILL.md (opens in a new tab)5 KB

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