Skills

genmol-nim

genmol-nim is a skill in NVIDIA/skills, last changed 30 Sept 2026. It can run shell commands, reach the network, name web addresses and pre-approve tools — read the findings before installing. Our pattern check found 1 item to review at commit d7e1e2c on 27 Oct 2026.

Pattern check: 1 item to review · commit d7e1e2c · 27 Oct 2026

Install
From the author
Generate novel drug-like molecules using the GenMol NIM microservice. Use for de novo generation, scaffold decoration, motif extension, lead optimization, SAFE notation, QED or LogP ranking, hosted NVIDIA API calls, or local Docker deployment. GenMol takes SAFE notation in the smiles field, not ordinary SMILES.
Licence
Apache 2.0 and CC BY 4.0
Repo stars
3.8k
Folder last changed
30 Sept 2026 (opens in a new tab)
Publisher
NVIDIA
Files
13 files
Checked
d7e1e2c (opens in a new tab) · 27 Oct 2026

Install

Each tab says whether it installs commit d7e1e2c, the one we checked, or the latest version.

No tab for your agent? Use Any agent for OpenCode, Goose, Windsurf (Devin Desktop), Zed, Roo Code, Factory Droid, Junie, Amp and Antigravity, and Claude Code for Cline. Kiro needs the folder copied by hand.

Pinned to commit d7e1e2c, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&
  git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/NVIDIA/skills.git "$tmp" &&
  git -C "$tmp" fetch -q --depth 1 origin d7e1e2c728579ad38174443ef22382d0fb4615b5 &&
  git -C "$tmp" sparse-checkout set -- skills/bionemo-genmol-nim &&
  git -C "$tmp" checkout -q d7e1e2c728579ad38174443ef22382d0fb4615b5 &&
  mkdir -p .claude/skills &&
  mkdir .claude/skills/genmol-nim &&
  cp -R "$tmp"/skills/bionemo-genmol-nim/. .claude/skills/genmol-nim/ &&
  rm -rf "$tmp"

If Claude Code was already running and this created the skills folder, run /reload-skills.

Claude Code docs (opens in a new tab)

What it can touch

From the files and frontmatter at commit d7e1e2c. This is how much a skill can do, not whether it is risky.

What it can touch: Shell, network or credentials

  • Runs shell commands

    Its instructions or files give the agent commands to run on your computer.

  • Reaches the network

    It sends or fetches data over the internet, for example with curl, an HTTP library or a package install.

  • Names web addresses

    It mentions outside web addresses the agent may visit. We list them but don't follow them.

  • Pre-approves tools

    Its allowed-tools field lists tools the agent may use without asking you first, in agents that honour it.

    SKILL.md:7

Pattern check

Pattern check: 1 item to review · commit d7e1e2c · 27 Oct 2026

We checked every text file in this skill, at commit d7e1e2c on 27 Oct 2026, against 45 published patterns such as download-and-run commands, hidden text and credential access. We don't run the skill, we don't read the web pages it points to, and we can't judge everything its instructions might lead an agent to do. In published tests, pattern checks like this one missed most malicious skills. Read the skill before you install it — especially anything it asks you to download or run.

How the check worksReport an incorrect finding

Outside links we did not follow

  • https://health.api.nvidia.com/v1/biology/nvidia/genmol/generate
  • https://nvcr.io
  • https://app.intigriti.com/programs/nvidia/nvidiavdp/detail

Format check

Each agent reads SKILL.md a little differently. We check the file against each one's published rules; we don't run the skill in any agent.

  • Agent Skills specFails

    The open format from agentskills.io, held to what the strictest agents enforce, so one folder loads everywhere.

    • Error

      The name "genmol-nim" doesn't match its folder "bionemo-genmol-nim". The spec requires them to match. N4

      Fix: Set name: bionemo-genmol-nim, or rename the folder to genmol-nim.

    • Note

      Anthropic's packaging script leaves these out: evals/. F8

      Fix: Delete them, or list them in .gitignore.

    • Note

      Reference files that SKILL.md doesn't link: BENCHMARK.md and skill-card.md. Anthropic suggests linking every reference file directly from SKILL.md. B4

      Fix: Link each one from SKILL.md and say when to read it.

    • Note

      Reference files over 100 lines with no table of contents at the top: BENCHMARK.md (122 lines) and references/api.md (199 lines). B5

      Fix: Add a short list of the sections at the top of each.

  • Claude CodePasses

    Claude Code reads its own extra fields, ignores unknown ones, and still loads a skill whose frontmatter is broken, without its fields.

    • Note

      Anthropic's packaging script leaves these out: evals/. F8

      Fix: Delete them, or list them in .gitignore.

    • Note

      The name "genmol-nim" doesn't match its folder "bionemo-genmol-nim". Claude Code shows the skill as /genmol-nim, and the folder name also invokes it. N4

      Fix: Set name: bionemo-genmol-nim, or rename the folder to genmol-nim.

    • Note

      Reference files that SKILL.md doesn't link: BENCHMARK.md and skill-card.md. Anthropic suggests linking every reference file directly from SKILL.md. B4

      Fix: Link each one from SKILL.md and say when to read it.

    • Note

      Reference files over 100 lines with no table of contents at the top: BENCHMARK.md (122 lines) and references/api.md (199 lines). B5

      Fix: Add a short list of the sections at the top of each.

  • Claude apps & API uploadFails

    Uploading to claude.ai or the Claude API, or packaging with Anthropic's script, accepts only the six spec fields and stops on anything else.

    • Error

      The name "genmol-nim" doesn't match its folder "bionemo-genmol-nim". claude.ai refuses an upload whose folder name doesn't match the skill name. N4

      Fix: Set name: bionemo-genmol-nim, or rename the folder to genmol-nim.

    • Note

      Anthropic's packaging script leaves these out: evals/. F8

      Fix: Delete them, or list them in .gitignore.

    • Note

      The description is 312 characters. The claude.ai Help Center says 200 at most, though Anthropic's API docs and validator allow 1,024. D4

      Fix: If the claude.ai upload refuses it, trim the description to 200 characters.

    • Note

      Reference files that SKILL.md doesn't link: BENCHMARK.md and skill-card.md. Anthropic suggests linking every reference file directly from SKILL.md. B4

      Fix: Link each one from SKILL.md and say when to read it.

    • Note

      Reference files over 100 lines with no table of contents at the top: BENCHMARK.md (122 lines) and references/api.md (199 lines). B5

      Fix: Add a short list of the sections at the top of each.

  • OpenAI (Codex & API)Passes with warnings

    Codex finds SKILL.md by its exact name and needs a description; OpenAI's Skills API checks the frontmatter against the spec and caps uploads.

    • Warning

      The name "genmol-nim" doesn't match its folder "bionemo-genmol-nim". OpenAI's own upload example uses a differently named folder, but the spec it follows says they must match. N4

      Fix: Set name: bionemo-genmol-nim, or rename the folder to genmol-nim.

    • Note

      Anthropic's packaging script leaves these out: evals/. F8

      Fix: Delete them, or list them in .gitignore.

  • VS Code & CopilotPasses with warnings

    VS Code reads skills one folder below .github/skills, .claude/skills or .agents/skills and falls back to the folder name when the name is missing or differs; GitHub's Copilot docs require the exact name SKILL.md.

    • Warning

      The name "genmol-nim" doesn't match its folder "bionemo-genmol-nim". VS Code uses the folder name, bionemo-genmol-nim, instead. N4

      Fix: Set name: bionemo-genmol-nim, or rename the folder to genmol-nim.

    • Note

      Anthropic's packaging script leaves these out: evals/. F8

      Fix: Delete them, or list them in .gitignore.

SKILL.md

Files

13 files

PathSize
BENCHMARK.md (opens in a new tab)7.1 KB
SKILL.md (opens in a new tab)5.3 KB
config/skillspector-baseline.yml (opens in a new tab)323 B
evals/config.yml (opens in a new tab)117 B
evals/evals.json (opens in a new tab)10.5 KB
evals/trigger_evals.json (opens in a new tab)2.2 KB
references/api.md (opens in a new tab)6.8 KB
references/examples.md (opens in a new tab)1.6 KB
references/parameters.md (opens in a new tab)1.1 KB
references/science.md (opens in a new tab)1.4 KB
references/validation.md (opens in a new tab)1.2 KB
skill-card.md (opens in a new tab)4.2 KB
skill.oms.sig (opens in a new tab)6.3 KB

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