imaging-data-commons

K-Dense-AI/scientific-agent-skills Data & analytics

imaging-data-commons is a skill in K-Dense-AI/scientific-agent-skills, last changed 1 Oct 2026. It can install more skills, run shell commands, reach the network, name web addresses and bundle scripts — read the findings before installing.

From the author

Queries and downloads public cancer imaging data from NCI Imaging Data Commons. Supports IDC collection discovery, DICOM access, radiology (CT, MR, PET) and pathology AI datasets, metadata SQL, visualization, licensing, and citations. Uses public metadata and download routes without authentication; optional BigQuery and Google Healthcare routes require Google credentials.

What it can touch

Installs more skills
Runs shell commands
Reaches the network
Names web addresses
Bundles scripts
+2 more
- Names web addresses
- Bundles scripts

How much a skill can do, not whether it is risky.

Pattern check

Nothing flagged

That isn't proof the skill is harmless.

Commit a25cf9e · 3 Nov 2026

How the check works

Pattern check: nothing flagged

That isn't proof the skill is harmless.

Install

Each tab says whether it installs commit a25cf9e, the one we checked, or the latest version.

OpenCode also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Goose also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Windsurf (Devin Desktop) also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Zed also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Roo Code also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Factory Droid also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Junie also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

Amp also looks in .agents/skills/ and ~/.agents/skills/, so use the Any agent steps.

No install command here reaches Kiro. Copy the skill's folder into .kiro/skills/ in your project, or ~/.kiro/skills/ for all your projects. K-Dense-AI/scientific-agent-skills/skills/imaging-data-commons (opens in a new tab)

Antigravity also looks in .agents/skills/, so the Any agent steps reach it with This project. For All projects, see where Antigravity looks.

Cline also looks in .claude/skills/, so the Claude Code steps reach it with This project. For All projects, see where Cline looks.

No tab for your agent? Use Any agent for OpenCode, Goose, Windsurf (Devin Desktop), Zed, Roo Code, Factory Droid, Junie and Amp. With This project, Any agent also reaches Antigravity and Claude Code reaches Cline. Kiro needs the folder copied by hand.

Pinned to commit a25cf9e, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&mkdir -p .claude/skills &&mkdir .claude/skills/imaging-data-commons &&cp -R "$tmp"/skills/imaging-data-commons/. .claude/skills/imaging-data-commons/ &&rm -rf "$tmp"

If Claude Code was already running and this created the skills folder, run /reload-skills.

Claude Code docs

Pinned to commit a25cf9e, the one we checked.

Skills in the Claude apps belong to your account rather than to a project.

Make imaging-data-commons.zip, with the skill folder at the top level:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&out="$(mktemp -d)" &&cp -R "$tmp"/skills/imaging-data-commons "$out"/imaging-data-commons &&(cd "$out" && zip -qr - imaging-data-commons) > imaging-data-commons.zip &&rm -rf "$tmp" "$out"

In Claude, open Customize > Skills, select +, then + Create skill > Upload a skill, and choose imaging-data-commons.zip.

On Free, Pro and Max plans, turn on Code execution and file creation (Create and edit files in newer settings) under Settings > Capabilities.

Claude apps docs

Pinned to commit a25cf9e, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&mkdir -p .agents/skills &&mkdir .agents/skills/imaging-data-commons &&cp -R "$tmp"/skills/imaging-data-commons/. .agents/skills/imaging-data-commons/ &&rm -rf "$tmp"

Codex picks up new skills on its own; restart it if this one does not appear.

Codex docs

Pinned to commit a25cf9e, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&mkdir -p .cursor/skills &&mkdir .cursor/skills/imaging-data-commons &&cp -R "$tmp"/skills/imaging-data-commons/. .cursor/skills/imaging-data-commons/ &&rm -rf "$tmp"

Cursor docs

Pinned to commit a25cf9e, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&mkdir -p .github/skills &&mkdir .github/skills/imaging-data-commons &&cp -R "$tmp"/skills/imaging-data-commons/. .github/skills/imaging-data-commons/ &&rm -rf "$tmp"

In a running Copilot CLI session, run /skills reload.

Or install it with gh skill, which also installs the commit we checked. Needs GitHub CLI 2.90 or later.

gh skill install K-Dense-AI/scientific-agent-skills skills/imaging-data-commons/SKILL.md@a25cf9ec00e2745d03f8704acf6f6919694ccd9a --agent github-copilot --scope project

Copilot & VS Code docs

Pinned to commit a25cf9e, the one we checked.

From your project's root folder:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&mkdir -p .gemini/skills &&mkdir .gemini/skills/imaging-data-commons &&cp -R "$tmp"/skills/imaging-data-commons/. .gemini/skills/imaging-data-commons/ &&rm -rf "$tmp"

In a running session, run /skills reload.

Or use Gemini CLI’s own installer. Installs the latest version, not the one we checked.

gemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/imaging-data-commons --scope workspace

Gemini CLI docs

Pinned to commit a25cf9e, the one we checked.

OpenCode, Goose, Windsurf (Devin Desktop), Zed, Roo Code, Factory Droid, Junie, Amp and Antigravity read .agents/skills in a project.

From your project's root folder:

tmp="$(mktemp -d)" &&git clone -q --depth 1 --filter=blob:none --no-checkout https://github.com/K-Dense-AI/scientific-agent-skills.git "$tmp" &&git -C "$tmp" fetch -q --depth 1 origin a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&git -C "$tmp" sparse-checkout set -- skills/imaging-data-commons &&git -C "$tmp" checkout -q a25cf9ec00e2745d03f8704acf6f6919694ccd9a &&mkdir -p .agents/skills &&mkdir .agents/skills/imaging-data-commons &&cp -R "$tmp"/skills/imaging-data-commons/. .agents/skills/imaging-data-commons/ &&rm -rf "$tmp"

Or use the skills CLI from skills.sh. Installs the latest version, not the one we checked. The skills CLI reports installs to skills.sh unless you set DISABLE_TELEMETRY=1.

npx skills@1.7.4 add K-Dense-AI/scientific-agent-skills --skill imaging-data-commons

Agent Skills docs

Read SKILL.md first

Licence not identified

Licence

55.9k

Repo stars

Folder last changed

Publisher

Files

Checked

3 Nov 2026

What it can touch

From the files and frontmatter at commit a25cf9e. This is how much a skill can do, not whether it is risky.

Installs more skills
It tells the agent to install other skills, plugins or tool servers.
references/mcp_guide.md:176 (opens in a new tab)
Runs shell commands
Its instructions or files give the agent commands to run on your computer.
references/mcp_guide.md:176 (opens in a new tab)
Reaches the network
It sends or fetches data over the internet, for example with curl, an HTTP library or a package install.
Names web addresses
It mentions outside web addresses the agent may visit. We list them but don't follow them.
Outside links we did not follow
Bundles scripts
The folder holds code files the agent may run.

Pattern check

Pattern check: nothing flagged · commit a25cf9e · 3 Nov 2026

We checked every text file in this skill, at commit a25cf9e on 3 Nov 2026, against 45 published patterns such as download-and-run commands, hidden text and credential access. We don't run the skill, we don't read the web pages it points to, and we can't judge everything its instructions might lead an agent to do. In published tests, pattern checks like this one missed most malicious skills. Read the skill before you install it — especially anything it asks you to download or run.

How the check works Report an incorrect finding

Outside links we did not follow

https://github.com/ImagingDataCommons/imaging-data-commons-skill
https://github.com/imagingdatacommons/idc-index
https://api.imaging.datacommons.cancer.gov/mcp
https://api.imaging.datacommons.cancer.gov/v3
https://github.com/ImagingDataCommons/SlicerIDCBrowser
https://portal.imaging.datacommons.cancer.gov/
https://pydicom.github.io/pydicom/stable/reference/generated/pydicom.filereader.dcmread.html
https://portal.imaging.datacommons.cancer.gov/explore/
https://learn.canceridc.dev/
https://github.com/ImagingDataCommons/IDC-Tutorials

Show 40 more

https://discourse.canceridc.dev/
https://github.com/ImagingDataCommons/idc-index
https://idc-index.readthedocs.io/en/latest/indices_reference.html
https://doi.org/10.1148/rg.230180
https://github.com/ImagingDataCommons/imaging-data-commons-skill/releases
https://docs.cloud.google.com/bigquery/docs/sandbox
https://github.com/ImagingDataCommons/etl_flow/blob/master/bq/generate_tables_and_views/derived_tables/BQ_Table_Building/derived_data_views/sql/dicom_all.sql
https://viewer.imaging.datacommons.cancer.gov/
https://www.gehealthcare.com/products/interoperability/dicom/magnetic-resonance-imaging-dicom-conformance-statements
https://www.siemens-healthineers.com/services/it-standards/dicom-conformance-statements-magnetic-resonance
https://www.siemens-healthineers.com/services/it-standards/dicom-conformance-statements-computed-tomography
https://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_7.8.html
https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_e.html
https://web.archive.org/web/20260520044207/https://www.na-mic.org/wiki/NAMIC_Wiki:DTI:DICOM_for_DWI_and_DTI
https://github.com/nslay/StandardizeBValue
https://cloud.google.com/bigquery/pricing
https://docs.cloud.google.com/bigquery/docs/best-practices-costs
https://docs.cloud.google.com/healthcare-api/docs/how-tos/dicom-bigquery-schema
https://docs.cloud.google.com/bigquery/docs/reference/standard-sql/query-syntax
https://www.kaggle.com/learn/intro-to-sql
https://github.com/ImagingDataCommons/idc-bigquery-cookbook
https://idc-index.readthedocs.io/
https://learn.canceridc.dev/data/organization-of-data/clinical
https://datastudio.google.com/u/0/reporting/04cf5976-4ea0-4fee-a749-8bfd162f2e87/page/p_s7mk6eybqc
https://idc-index.readthedocs.io/en/latest/indices_reference.html#clinical-index
https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/advanced_topics/clinical_data_intro.ipynb
https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/getting_started/exploring_clinical_data.ipynb
https://github.com/ImagingDataCommons/IDC-Tutorials/blob/master/notebooks/collections_demos/nlst_clinical_data.ipynb
https://github.com/peak/s5cmd/releases
https://learn.canceridc.dev/data/organization-of-data/files-and-metadata
https://learn.canceridc.dev/data/data-versioning
https://learn.canceridc.dev/data/organization-of-data/guids-and-uuids
https://learn.canceridc.dev/data/downloading-data/direct-loading
https://registry.opendata.aws/nci-imaging-data-commons/
https://github.com/peak/s5cmd
https://docs.aws.amazon.com/cli/latest/reference/s3/
https://boto3.amazonaws.com/v1/documentation/api/latest/reference/services/s3.html
https://cloud.google.com/storage/docs/gsutil
https://cloud.google.com/sdk/gcloud/reference/storage
https://cloud.google.com/python/docs/reference/storage/latest

Format check

Each agent reads SKILL.md a little differently. We check the file against each one's published rules; we don't run the skill in any agent.

Agent Skills specPasses with warnings
The open format from agentskills.io, held to the strictest version of each rule among the agents we check.
- Warning
  The body is about 7,570 tokens (approx.); the spec suggests under 5,000. B2
  Fix: Move detail into reference files that the agent reads only when needed.
- Note
  Reference files over 100 lines with no table of contents at the top: references/bigquery_guide.md (887 lines), references/cli_guide.md (300 lines), references/clinical_data_guide.md (337 lines), references/cloud_storage_guide.md (345 lines), references/dicomweb_guide.md (427 lines) and 8 more. B5
  Fix: Add a short list of the sections at the top of each.
Claude CodePasses
Claude Code reads its own extra fields, ignores unknown ones, and still loads a skill whose frontmatter is broken, without its fields.
- Note
  The body is about 7,570 tokens (approx.); the spec suggests under 5,000. After compaction Claude Code keeps only the first 5,000 tokens of a skill. B2
  Fix: Move detail into reference files that the agent reads only when needed.
- Note
  Reference files over 100 lines with no table of contents at the top: references/bigquery_guide.md (887 lines), references/cli_guide.md (300 lines), references/clinical_data_guide.md (337 lines), references/cloud_storage_guide.md (345 lines), references/dicomweb_guide.md (427 lines) and 8 more. B5
  Fix: Add a short list of the sections at the top of each.
Claude apps & API uploadPasses
Uploading to claude.ai or the Claude API, or packaging with Anthropic's script, accepts only the six spec fields and stops on anything else.
- Note
  The description is 374 characters. The claude.ai Help Center says 200 at most, though Anthropic's API docs and validator allow 1,024. D4
  Fix: If the claude.ai upload refuses it, trim the description to 200 characters.
- Note
  The body is about 7,570 tokens (approx.); the spec suggests under 5,000. Anthropic's guidance says the same. B2
  Fix: Move detail into reference files that the agent reads only when needed.
- Note
  Reference files over 100 lines with no table of contents at the top: references/bigquery_guide.md (887 lines), references/cli_guide.md (300 lines), references/clinical_data_guide.md (337 lines), references/cloud_storage_guide.md (345 lines), references/dicomweb_guide.md (427 lines) and 8 more. B5
  Fix: Add a short list of the sections at the top of each.
OpenAI (Codex & API)Passes
VS Code & CopilotPasses

SKILL.md

We only show SKILL.md text here when its licence clearly allows it.

Read SKILL.md on GitHub

Files

15 files

Path	Size
SKILL.md (opens in a new tab)	30.7 KB
references/bigquery_guide.md (opens in a new tab)	35.4 KB
references/cli_guide.md (opens in a new tab)	9.3 KB
references/clinical_data_guide.md (opens in a new tab)	12.1 KB
references/cloud_storage_guide.md (opens in a new tab)	14.2 KB
references/dicomweb_guide.md (opens in a new tab)	16.1 KB
references/digital_pathology_guide.md (opens in a new tab)	15.3 KB
references/index_tables_guide.md (opens in a new tab)	12.1 KB
references/licensing_and_citation.md (opens in a new tab)	10 KB
references/mcp_guide.md (opens in a new tab)	9.4 KB
references/parquet_access_guide.md (opens in a new tab)	9.8 KB
references/rest_api_guide.md (opens in a new tab)	33.3 KB
references/sql_patterns.md (opens in a new tab)	16.9 KB
references/use_cases.md (opens in a new tab)	8.5 KB
scripts/check_version.py (opens in a new tab)	5.5 KB

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All skills in K-Dense-AI/scientific-agent-skills

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Same category, most repo stars first.

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At a glance

What it can touch

Pattern check

Install

Claude Code

Claude apps

Codex

Cursor

Copilot & VS Code

Gemini CLI

Any agent

What it can touch

Pattern check

Outside links we did not follow

Format check

SKILL.md

Files

More from K-Dense-AI/scientific-agent-skills

Other Data & analytics skills